Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015865134.1_cds_XP_016516231.1_28494
CDS Infomation

[gene=LOC107832849] [db_xref=GeneID:107832849] [protein=vacuolar-processing enzyme gamma-isozyme-like] [protein_id=XP_016516231.1] [location=join(45282..45452,45564..45728,45832..45988,46124..46209,46394..46578,47119..47167,47439..47648,48192..48398,48600..48737)] [gbkey=CDS]
Sequence

ATGATTCGAAAAAATGGTGTTGTGCCATTCCTAGTTGCACTTTTTGTCCTAGTTTGTACT
GCTGAGGGTCGTAACTTGCTGGAGAGTATTGTTGAAGATGATAATCCGACTGGAACTAAA
TGGGCTGTGTTGGTAGCTGGATCAAATGAGTGGGATAATTACAGACACCAGGCGGATGTA
TGTCATGCATATCAACTACTGAAGAAAGGAGGTCTAAAAGATGAAAACATCATCGTATTC
ATGTACGACGATATTGCTTATAATAAAAACAACCCCAGACCTGGAATTATCATCAATAGC
CCCCACGGCCATGATGTTTATAAAGGAGTACCCAAGGATTACACAGGAAAAGATTGTAAT
GCTGACAATTTTTTCGCTGTTATCCTTGGAAATAAGAGTGCTCTCACTGGGGGCAGTGGG
AAGGTTGTGGAAAATGGTCCAAATGATTATATCTTTATCTACTACGCTGATCATGGTGCT
CCTGGCCTTATTGGTATGCCTAGTGGAGATGTTGTCTATGCCGACGATCTGAACAGAGTC
CTGATTAAAAAACACACTTTTGGAACATATTCAAAATTGGTATTTTACATGGAAGCTTGT
GAATCTGGAAGTATGTTTGATGGTTTACTCCCGAAAGGTTTAAACATATACGTAACAGCA
GCATCAAAGCCTGATGAGAGCAGTTGGGCTACCTACTGTATTCGTTTAGGTGATGAAGAT
CAATGCTTAGGAGACTTGTACAGTGTTTCTTGGTTGGAGGATAGTGATTTGCACGATCGG
CAAGTTGAAACTTTGGAGAAGCAGTATCAGCTGGTTCGTAAGAGAACTCTAAACAATGGT
ACAGAAGAAGGCTCCCATGTCATGCAATATGGTGATTTACATATTAGTGAGGATCCTCTT
TTCAGATATATGGGTTCTAATTCTGCAAAAAATAGTTATAATACTTCTAACAACGACGAG
TCATGGCTACCCTCAAGGACTGTTAACCAGCGCGATGTTCATCTCATGCATTTATGGTCT
AAGTTCCGGTCTGCGCCTGAAGGCTCTGCTAGAAAAGCTGAAGCTCATCGGCAACTAAGT
GAAGCCTTATCACAGAGAGAAGATGTAGATAACAGTGTGAGACATATTGGAGAAGTTCTG
TTTGGAGTTGAGAAAAGTCACAAGTTGCTGAACACTGTTCGACCTGCTGGACAACCCCTT
GTTGATGATTGGGACTGCCTTAAATCCTTTGTCAAGATATTTGAGTCACAATGTGGAACG
TTAACTCCCTACGGAAGGAAACACGTTCGTGGCTTTGCTAACTTGTGCAATGCTGGAATT
CGAAGGGAGCAAATGGCTGCAGCAGCTAAACAAGCATGTCCTCCTTAA

Peptide Sequence

PEP ID

XP_016516231.1
PEP Infomation

PREDICTED: vacuolar-processing enzyme gamma-isozyme-like [Nicotiana tabacum]
Sequence

MIRKNGVVPFLVALFVLVCTAEGRNLLESIVEDDNPTGTKWAVLVAGSNEWDNYRHQADV
CHAYQLLKKGGLKDENIIVFMYDDIAYNKNNPRPGIIINSPHGHDVYKGVPKDYTGKDCN
ADNFFAVILGNKSALTGGSGKVVENGPNDYIFIYYADHGAPGLIGMPSGDVVYADDLNRV
LIKKHTFGTYSKLVFYMEACESGSMFDGLLPKGLNIYVTAASKPDESSWATYCIRLGDED
QCLGDLYSVSWLEDSDLHDRQVETLEKQYQLVRKRTLNNGTEEGSHVMQYGDLHISEDPL
FRYMGSNSAKNSYNTSNNDESWLPSRTVNQRDVHLMHLWSKFRSAPEGSARKAEAHRQLS
EALSQREDVDNSVRHIGEVLFGVEKSHKLLNTVRPAGQPLVDDWDCLKSFVKIFESQCGT
LTPYGRKHVRGFANLCNAGIRREQMAAAAKQACPP

Transcript Sequence

Gene sequence data has not been registered.